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Jenkins was having issues and I safe rebooted it in order to solve the issue but the issue got solved the reboot. Some jobs have ours to run so is there way to cancel the reboot?

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I assume you talk about jenkins cli?

There is no command to abort the safeRestart.
Use quiteDown, cancelQuietDown instead and safeRestart only if needed.

safeRestart: Puts Jenkins into the quiet mode, wait for existing builds to be completed, and then restart Jenkins
quietDown: Put Jenkins in a Quiet mode, in preparation for a restart. In that mode Jenkins don’t start any build
cancelQuietDown: Cancel the effect of the “quiet-down” command

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